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libcats.org
R Programming for Bioinformatics (Chapman & Hall/CRC Computer Science & Data Analysis)Robert GentlemanR itself is well equipped with documentation, which ships with every
distribution of R and the R add-on packages. But a good overall picture, how R concrete is used in nowadays bioinformatics software development, was always missing. If you are interested in bioinformatics software developing, and you aren't looking for a book which is just explaining how to do standard biological data analysis within R, or how to solve statistical problems whit R, but how to implement R-code for the biological research field - this is the book! The book goes in a reasonable deep through the whole guts of the R language and the core of the bioconductor project. Detailed material can then always be found in the substantial official documentation. This book was written by a master wizard of the filed - Robert Gentleman, R developer form the beginning on and member of the [...] project core team. Recently another book - R in a Nutshell, which promises to go through the R guts in a same manner, was published by the famous O'Reilly. I haven't read 'R in a Nutshell' yet, so I can't compare. However, to bioinformaticians whit a programmer's angle I can warmly recommend 'R Programming for Bioinformatics'. For me it was a pleasure to read. And it remains one of the best guideline and source to start tackling R software development challenges, in unfamiliarly and new informatics fields.
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